Mouse (mm10): Browse 0 gene located around the binding sites of Spi1 (from -30kb to 10kb) in sample MOUMM00068

Download: EXCEL TXT

    GeneSymbol U30kbS D10kbS U30kbM D10kbM U30kbD D10kbD TssPosition GeneID GeneType RefGene MotifStart MotifEnd MotifStrand MotifSequence MotifReverseSequence
GeneSymbol U30kbS D10kbS Up30kbM D10kbM U30kbD D10kbD TssPosition GeneID GeneType RefGene MotifStart MotifEnd MotifStrand MotifSequence MotifReverseSequence

Details of sample MOUMM00068

Cell line or tissue primary B cells
Treatment resting mature peripheral primary B cells, Bi-8i mice, stimulated for 1 Days, strain 129
Peak called program QuEST-v2.4
Reference description Ochiai K, et al. Immunity 2013
Source -
Binding motif -

Reference:

Ochiai K, Maienschein-Cline M, Simonetti G, Chen J et al. Transcriptional regulation of germinal center B and plasma cell fates by dynamical control of IRF4. Immunity 2013 May 23;38(5):918-29. [link to Pubmed: 23684984]

Descriptions of Regulation

Table Features:
1) Motif: Click the "+" at each row to display the information of binding motifs.
2) U30kbS: The number of binding sites (total) located within 30kb upstream.
3) D10kbS: The number of binding sites (total) located within 10kb downstream.
4) U30kbM: The number of binding sites (with motifs) located within 30kb upstream.
5) D10kbM: The number of binding sites (with motifs) located within 10kb downstream.
6) U30kbD: The nearest distance of binding sites to the TSS of the gene (upstream).
7) D10kbD: The nearest distance of binding sites to the TSS of the gene (downstream).
8) Search: Users can filter the results by searching in the table. "U30kbS", "D10kbS", "U30kbM", "D30kbM", "U30kbD" and "D30kbD" column are allowed searching patterns like ">=integer", "<=integer", ">integer", "<integer" and "=integer". The ">=integer" is set by default.
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