Expression Mean Normalization: (log2(FPKM)-Mean)  

References:

Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A,Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA,Zaleski C, Rozowsky J, Röder M, Kokocinski F, Abdelhamid RF, Alioto T,Antoshechkin I, Baer MT, Bar NS, Batut P, Bell K, Bell I, Chakrabortty S, Chen X,Chrast J, Curado J, Derrien T, Drenkow J, Dumais E, Dumais J, Duttagupta R,Falconnet E, Fastuca M, Fejes-Toth K, Ferreira P, Foissac S, Fullwood MJ, Gao H, Gonzalez D, Gordon A, Gunawardena H, Howald C, Jha S, Johnson R, Kapranov P, KingB, Kingswood C, Luo OJ, Park E, Persaud K, Preall JB, Ribeca P, Risk B, Robyr D, Sammeth M, Schaffer L, See LH, Shahab A, Skancke J, Suzuki AM, Takahashi H,Tilgner H, Trout D, Walters N, Wang H, Wrobel J, Yu Y, Ruan X, Hayashizaki Y,Harrow J, Gerstein M, Hubbard T, Reymond A, Antonarakis SE, Hannon G, GiddingsMC, Ruan Y, Wold B, Carninci P, Guigó R, Gingeras TR. Landscape of transcription in human cells. Nature2012 Sep 6;489(7414):101-8. [link to Pubmed]

  • Users can choose Clade, Species and Studies to see the result tables by changing the values in the select box and click the "Choose" button.

  • Here we use a "blue-white-red" heatmap table to show the expression value of lncRNAs in each dataset. The color scale are shown in corlor bar. The gene expression value are normalized by (log2(FPKM)-Mean).

  • Click the name or gene symbol of the lncRNA to see detailed expression analysis of selected genes.