##Please cite: Ling-Ling Zheng#*, Ke-Ren Zhou#, Shun Liu, Ding-Yao Zhang, Ze-Lin Wang, Zhi-Rong Chen, Jian-Hua Yang* and Liang-Hu Qu*. dreamBase: DNA Modification, RNA Regulation and Protein Binding on Expressed Pseudogenes in Human Health and Disease. Revised. ##Binding sites of hsa-miR-122-5p found on pseudogenes ## SampleId Type Source SampleDetail ## SBDS229 AGO1-4:HITS-CLIP Huh7.5 HCV vs mock, J6/JFH1 Clone2, mRNA, anti-AGO1-4 (2A8 monoclonal) ID GeneSymbol GeneChr GeneStart GeneEnd GeneStrand BindingStart BindingEnd BindingStrand Alingment(target#sign#microRNA) SupportedDataset hsa-pse-4030 IL6STP1 chr17 15783288 15784307 + 15784109 15784130 + gtttgtggtaacAGTGTGAGGt# ||||||||| #ccagtggtcaccTCACACTCCt SBDS229 hsa-pse-3212 PSMA3P chr14 60179382 60180016 + 60179558 60179580 + gtTTGTGG-TAACAGTGTGAGGt# :|| :: :|| | ||||||| #ctGACTTTGGTTATAACACTCCa SBDS229 hsa-pse-12410 DNM1P47 chr15 101751553 101764961 + 101760368 101760389 + gtttgtggtaacagTGTGAGGt# ||||||| #gtgggaagaagaagACACTCCt SBDS229 hsa-pse-14299 RALGAPA1P1 chr9 105520128 105526359 + 105525700 105525721 + gtttgtggtaacagTGTGAGGt# ||||||| #ggacaagaagacaaACACTCCa SBDS229 hsa-pse-341 PEBP1P2 chr2 85341281 85341838 - 85341531 85341552 - gtTTGTGGTAACAGTGTGAGGt# | || || || |||||||| #acATCAGCAGTGACACACTCCt SBDS229 hsa-pse-1128 MRPS36P1 chr3 6773037 6773343 - 6773284 6773301 - gttTGTGGTAACAGTGTGAGGt# | |||| |||||||| #gtcAAACCA----CACACTCCa SBDS229 hsa-pse-3962 CTB-158E9.2 chr5 154493576 154494743 + 154493661 154493682 + gtttgtggtaacAGTGTGAGGt# ||||||||| #tccctccggaacTCACACTCCa SBDS229 hsa-pse-9302 GAPDHP51 chr1 51707138 51708137 - 51707608 51707628 - gtTTGTGGTAACAGTGTGAGGt# :|| :||| |||||||| #ggGAC-TCATAACCACACTCCa SBDS229 hsa-pse-11758 RP11-313J2.1 chr10 42336101 42353011 - 42336157 42336178 - gttTGTGGTAACAGTGTGAGGt# | | : || ||||||| #atcAGAGTCTTTAAACACTCCt SBDS229 hsa-pse-997 AC009487.6 chr2 161500885 161507705 - 161505297 161505316 - gtTTGTGGTAACAGTGTGAGGt# |||| | | ||||||| #ccAACAAAACAG--ACACTCCc SBDS229 hsa-pse-8420 PLEKHA8P1 chr12 45173190 45174713 - 45174156 45174177 - gtTTGTGGTAACAGTGTGAGGt# |:| | | |||||||| #tgAGCTGCTCTACCACACTCCa SBDS229 hsa-pse-3308 ETF1P2 chr7 151501878 151503463 + 151502645 151502667 + gttTGTG-GTAACAGTGTGAGGt# :||| : ||| |||||||| #ggtGCACTTTTTGGCACACTCCa SBDS229 hsa-pse-4921 NUFIP1P chr6 66093431 66094909 - 66094211 66094233 - gtTTGTGGTAACAG--TGTGAGGt# || |:|| ||: ||||||| #agAAGATCA-AGTTAGACACTCCa SBDS229 hsa-pse-6581 FSCN1P1 chr15 34494420 34495900 + 34495740 34495762 + gtTTGTGGTAACAG-TGTGAGGt# | || || | | ||||||| #tcACCAGCAGCGGCGACACTCCt SBDS229 hsa-pse-331 RP11-160A9.3 chr6 70693839 70694619 + 70694224 70694245 + gttTGTGGTAACAGTGTGAGGt# |::::| || :||||||| #tttATGTTAATGATACACTCCa SBDS229 hsa-pse-10973 MTCO1P40 chr17 53105734 53106358 + 53105780 53105801 + gtttgtggtAACAGTGTGAGGt# | | :||||||| #ttagctgacTCGCTACACTCCa SBDS229 hsa-pse-13170 ZNF355P chr21 13095305 13113790 - 13096406 13096427 - gttTGTGGTAACAGTGTGAGGt# | | : || ||||||| #gtcAGAGTCTTTAAACACTCCt SBDS229 hsa-pse-11884 RP11-61N20.3 chr11 49433480 49434438 - 49433924 49433944 - gtTTGTGGTAACAGTGTGAGGt# |:|| :| :||||||| #taAGCA-GGTGAATACACTCCa SBDS229 hsa-pse-11069 RP11-173G21.1 chr9 95292338 95294810 + 95294500 95294520 + gtTTGTGGTAACAGTGTGAGGt# |::|:: || ||||||| #gaAGTATT-CTGAAACACTCCa SBDS229 hsa-pse-1009 SLC31A1P1 chr3 172603440 172604006 - 172603908 172603929 - gttTGTGGTAACAGTGTGAGGt# || :|| ||||||||| #accACTTCAGCCTCACACTCCc SBDS229 hsa-pse-7702 AC139143.2 chr11 1802889 1804095 - 1803674 1803693 - gtttgtGGTAACAGTGTGAGGt# ||| || ||||||| #tgctgtCCA-AGT-ACACTCCt SBDS229 hsa-pse-7870 FOXO3B chr17 18670946 18672873 - 18671514 18671540 - gttTGTGGTAACA---G--TGTGAGGt# ||||:|| || | ||||||| #gtcACACTATGGTAACCAGACACTCCa SBDS229 hsa-pse-1920 RP11-64K7.1 chr3 132175402 132176711 + 132175643 132175664 + gtttgtggtaacagTGTGAGGt# ||||||| #ctgcagataagcagACACTCCa SBDS229 hsa-pse-8006 RP11-560B16.5 chr11 6843664 6844666 - 6843755 6843777 - gtTTGTGGTAAC--AGTGTGAGGt# ||: |: ||| ||||||| #tgAAT-CTCTTGAAAAACACTCCt SBDS229 hsa-pse-4068 RP11-5N19.3 chr15 56192353 56193262 - 56192647 56192668 - gtttgtggtaacagTGTGAGGt# ||||||| #tgttccttgcaaggACACTCCt SBDS229 hsa-pse-10150 AC078899.1 chr19 20257720 20259418 + 20258954 20258973 + gtttgTGGTAACAGTGTGAGGt# |:| || | ||||||| #gttgaATC-TTAT-ACACTCCc SBDS229 hsa-pse-2273 MTND5P11 chr5 134924648 134926459 - 134925880 134925904 - gtTTGTGGT-AACAG--TGTGAGGt# |:||: | || || ||||||| #ctAGCATGATTTCTCCTACACTCCa SBDS229 hsa-pse-7557 RAC1P2 chr4 46723830 46724408 - 46724082 46724106 - gtTTGTGGTAACAG---TGTGAGGt# ::||||| |||| ||||||| #gcGGCACCACTGTCCCAACACTCCc SBDS229 hsa-pse-7914 MTATP6P3 chr17 22529934 22530609 + 22530559 22530580 + gtttgtgGTAACAGTGTGAGGt# ::|| ||||||||| #tagcctaTGTTTTCACACTCCt SBDS229 hsa-pse-11121 GSTO3P chr3 130827659 130828376 + 130828230 130828251 + gtttgtggtaacaGTGTGAGGt# |||||||| #tgagtgtgtagaaCACACTCCa SBDS229 hsa-pse-10778 MTCO1P12 chr1 631074 632616 + 632036 632057 + gtttgtggtAACAGTGTGAGGt# | | |||||||| #ttagctgacTCGCCACACTCCa SBDS229 hsa-pse-11243 RCC2P6 chr11 62371146 62373168 + 62373069 62373095 + gtttGTGGTAAC-----AGTGTGAGGt# |:|||| | ||||||||| #cggtCGCCATGGGCTACTCACACTCCt SBDS229 hsa-pse-4711 RP3-467N11.2 chr6 100889603 100890338 + 100889627 100889648 + gttTGTGGT-AACAGTGTGAGGt# :|||:| || ||||||| #gatGCACTACCTG-AACACTCCc SBDS229 hsa-pse-12117 ZNF962P chr13 18467172 18485448 - 18468219 18468240 - gttTGTGGTAACAGTGTGAGGt# | | : || ||||||| #gtcAGAGTCTTTAAACACTCCt SBDS229 hsa-pse-12631 CH17-431G21.1 chr17 38195740 38257152 - 38202817 38202838 - gtttgtGGTAACAGTGTGAGGt# |::| |:||||||| #gtgtgtCTGTGTTTACACTCCt SBDS229 hsa-pse-13487 TECRP1 chr4 86949669 86950113 - 86950035 86950056 - gtTTGTGGTAACAGTGTGAGGt# | |||| | :||||||| #caATCACCCTCTCTACACTCCc SBDS229 hsa-pse-2728 DDX6P2 chr13 86275493 86277262 + 86275757 86275776 + gtTTGTGGTAACAGTGTGAGGt# |:::|| | |||||||| #gaAGTGCCCT--CCACACTCCa SBDS229 hsa-pse-473 RPL37P18 chr10 34663859 34664101 - 34664050 34664075 - gtTTGTGGT----AACAGTGTGAGGt# ||||:|: | | |||||||| #gaAACATCGCAGCTGGACACACTCCc SBDS229