Contact US
ENCORE is under constant maintenance and improvement. Any questions about the usage, comments or suggestions are appreciated.
Jian-Hua Yang: yangjh7@mail.sysu.edu.cn
RNA Information Center, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China
Jia-jia Xuan: xuanjj@mail2.sysu.edu.cn
RNA Information Center, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China
Our Tools
In addition to ENCORE, we have developed several databases and softwares to investigate the biological functions and mechanisms of various RNA in biological processes.
RMBase V2.0
Deciphering the Map of RNA Modifications from Epitranscriptome Sequencing Data. (Xuan et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D327-34.)
ENCORI
A database for exploring miRNA-mRNA and miRNA-ncRNA interaction maps from Argonaute and other RBP CLIP-Seq data. (Li et al. Nucleic Acids Res. 2014;42:D92-7.)
ChIPBase v2.0
Decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. (Zhou et al. Nucleic Acids Res. 2017 Jan 04;45(D1):D43-D50.)
dreamBase
DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease. (Zheng et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D85-D91.)
deepBase v3.0
deepBase v3.0: expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data. (Xie et al. Nucleic Acids Res. 2021 Jan 8;49(D1):D877-D883.)
tRF2Cancer
A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers. (Zheng et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W185-93.)
StarScan
A web server for scanning small RNA targets from degradome sequencing data. (Liu et al. Nucleic Acids Res. 2015 May 18.)
snoSeeker
An advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (Yang et al. Nucleic Acids Res. 2006;34:5112-5123.)
Pol3Base
Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs. (Li Cai, Jiajia Xuan, et al. Nucleic Acids Res. 2021 Oct 15.)