Information for 8-TCGCATGCTAAG (Motif 9)

A C G T A G T C C T A G T A G C C G T A C G A T A C T G A G T C A C G T C G T A C T G A A C T G
Reverse Opposite:
A G T C A G C T A C G T C G T A A C T G A G T C C G T A A C G T A T C G A G T C A C T G G T C A
p-value:1e-105
log p-value:-2.438e+02
Information Content per bp:1.878
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif5.89%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets105.1 +/- 20.5bp
Average Position of motif in Background119.7 +/- 78.2bp
Strand Bias (log2 ratio + to - strand density)-4.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TCGCATGCTAAG---
---TATGCWAATBAV
 A C G T A G T C C T A G T A G C C G T A C G A T A C T G A G T C A C G T C G T A C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

NFIC/MA0161.2/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TCGCATGCTAAG--
---NNTGCCAAGNN
 A C G T A G T C C T A G T A G C C G T A C G A T A C T G A G T C A C G T C G T A C T G A A C T G A C G T A C G T
A C G T A C G T A C G T G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCGCATGCTAAG---
TCNCCTGCTGNGNNN
 A C G T A G T C C T A G T A G C C G T A C G A T A C T G A G T C A C G T C G T A C T G A A C T G A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCGCATGCTAAG
GCGCATGCGCAG
 A C G T A G T C C T A G T A G C C G T A C G A T A C T G A G T C A C G T C G T A C T G A A C T G
T C A G T G A C C T A G T A G C T G C A A C G T T A C G A G T C A C T G A G T C T C G A T A C G

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCGCATGCTAAG-------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A G T C C T A G T A G C C G T A C G A T A C T G A G T C A C G T C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TCGCATGCTAAG---
---WATGCAAATGAG
 A C G T A G T C C T A G T A G C C G T A C G A T A C T G A G T C A C G T C G T A C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

NRF(NRF)/Promoter/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCGCATGCTAAG
GCGCATGCGCAC
 A C G T A G T C C T A G T A G C C G T A C G A T A C T G A G T C A C G T C G T A C T G A A C T G
A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C C T G A T A G C

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCGCATGCTAAG---
NNCGTTGCTATGGNN
 A C G T A G T C C T A G T A G C C G T A C G A T A C T G A G T C A C G T C G T A C T G A A C T G A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCGCATGCTAAG----
TTGTATGCAAATTAGA
 A C G T A G T C C T A G T A G C C G T A C G A T A C T G A G T C A C G T C G T A C T G A A C T G A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TCGCATGCTAAG-
---NVAGATAAGR
 A C G T A G T C C T A G T A G C C G T A C G A T A C T G A G T C A C G T C G T A C T G A A C T G A C G T
A C G T A C G T A C G T T C A G T A G C G C T A C A T G C T G A G C A T C G T A C T G A T A C G T C G A