Contact us
ChIPBase is under constant maintenance and improvement. Any questions about the usages, comments or suggestions are appreciated.
Please contact us:
Jian-Hua Yang (yangjh7@mail.sysu.edu.cn)
RNA Information Center, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China
Ke-Ren Zhou (zhoukr062@gmail.com)
RNA Information Center, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China
Our tools
We have developed several databases and softwares for ncRNA research.
starBase v2.0
A database for exploring miRNA-mRNA and miRNA-ncRNA interaction maps from Argonaute and other RBP CLIP-Seq data. (Li et al. Nucleic Acids Res. 2014;42:D92-7)
deepBase v2.0
Deeply Exploit Small RNAs, Long non-coding RNAs and Circular RNAs from Deep Sequencing Data. (Ling-Ling Zheng, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D196-202.)
StarScan
A web server for scanning small RNA targets from degradome sequencing data. (Liu et al. Nucleic Acids Res. 2015 Jul 1;43(W1):W480-6.)
RMBase
RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data. (Sun WJ et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D259-65.)
snoSeeker
An advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (Yang et al. Nucleic Acids Res. 2006;34:5112-5123)