In total, there are 24 samples in this source.

ID Name Type Chromosome Start End Strand Samples Expression DetailExp Evolution Function


References:

Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev.2011 Sep 15;25(18):1915-27. [link to Pubmed]

  • deepBase provides genome-wide identification of long noncoidng RNAs in 14 species from multiple tissues or cell lines.

  • Users can choose Clade, Species and Studies to see the result tables by changing the values in the select box and click the "Choose" button.

  • The result table will display the information of lncRNAs, including their genomic loci, strand, length, type, the counts of samples with expressed lncRNA and the total expression of this ncRNA in multiple experiments (RPKM).

  • To see detailed information of these lncRNAs, click the hyperlink under the name of the lncRNA .

  • To find the function of these lncRNAs, click the "Predict" button to the lncFunction web-server.