Details of RNA Modification Site of hg38
mod ID m1A_site_677 mod Site chr22:41877353-41877354:+
mod Type m1A Sequence ACTTCCCTGCTGCAGTGGGGAGGGGCCCACGACTCTGACCA
Motif Score noScore
RNA Structure Motif ......(..(((((......)))))..)...
 MFE -9.30
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE97419
Support sub-Dataset List GSE97419
Cell/Tissue List HEK293T
Seq Type List m1A-seq
Transcript ID List ENST00000424354.5,ENST00000462539.1,ENST00000361204.9,ENST00000464119.1,ENST00000612482.4
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000424354.5ENSG00000198911.12SREBF2nonsense_mediated_decaycds-8
ENST00000462539.1ENSG00000198911.12SREBF2retained_intronexon-4
ENST00000361204.9ENSG00000198911.12SREBF2protein_codingcds-8
ENST00000464119.1ENSG00000198911.12SREBF2retained_intronexon-2
ENST00000612482.4ENSG00000198911.12SREBF2protein_codingcds-8
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29072297

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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