Details of RNA Modification Site of hg38
mod ID m5C_site_13010 mod Site chr14:73287137-73287138:-
mod Type m5C Sequence CAAGCAGAAAGAGAGGAGATCATGAAACAAATGCAAGATGC
Motif Score noScore
RNA Structure Motif ...............................
 MFE 0.00
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE93749
Support sub-Dataset List GSE93749
Cell/Tissue List na
Seq Type List Bisulfite-seq
Transcript ID List ENST00000556772.5,ENST00000556989.1,ENST00000557486.1,ENST00000554315.5,ENST00000544991.7,ENST00000554546.5,ENST00000555859.5,ENST00000555307.5,ENST00000356296.8,ENST00000559312.5,ENST00000555394.5,ENST00000555238.5,ENST00000557597.5,ENST00000554394.5,ENST00000535282.5,ENST00000553997.5,ENST00000554521.6,ENST00000359560.7,ENST00000355058.7,ENST00000555738.6,ENST00000560335.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000556772.5ENSG00000133961.20NUMBprotein_codingcds-3
ENST00000556989.1ENSG00000133961.20NUMBretained_intronexon-3
ENST00000557486.1ENSG00000133961.20NUMBretained_intronexon-1
ENST00000554315.5ENSG00000133961.20NUMBretained_intronexon-7
ENST00000544991.7ENSG00000133961.20NUMBprotein_codingcds-6
ENST00000554546.5ENSG00000133961.20NUMBprotein_codingcds-8
ENST00000555859.5ENSG00000133961.20NUMBprotein_codingcds-6
ENST00000555307.5ENSG00000133961.20NUMBprotein_codingcds-8
ENST00000356296.8ENSG00000133961.20NUMBprotein_codingcds-9
ENST00000559312.5ENSG00000133961.20NUMBprotein_codingcds-7
ENST00000555394.5ENSG00000133961.20NUMBprotein_codingcds-9
ENST00000555238.5ENSG00000133961.20NUMBprotein_codingcds-9
ENST00000557597.5ENSG00000133961.20NUMBprotein_codingcds-8
ENST00000554394.5ENSG00000133961.20NUMBprotein_codingcds-8
ENST00000535282.5ENSG00000133961.20NUMBprotein_codingcds-6
ENST00000553997.5ENSG00000133961.20NUMBprocessed_transcriptexon-1
ENST00000554521.6ENSG00000133961.20NUMBprotein_codingcds-6
ENST00000359560.7ENSG00000133961.20NUMBprotein_codingcds-5
ENST00000355058.7ENSG00000133961.20NUMBprotein_codingcds-6
ENST00000555738.6ENSG00000133961.20NUMBprotein_codingcds-6
ENST00000560335.5ENSG00000133961.20NUMBprotein_codingcds-7
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 28418038

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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