Details of RNA Modification Site of hg38
mod ID m5C_site_13276 mod Site chr14:100829761-100829762:+
mod Type m5C Sequence TGCATCAGGTAGGGGCTTTGCAGAGACCATCGACGGGCTGA
Motif Score noScore
RNA Structure Motif ..(((....((...))....)))........
 MFE -3.60
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE122254
Support sub-Dataset List GSE122254
Cell/Tissue List

frontalcortex, liver, spleen, testis
Seq Type List Bisulfite-seq
Transcript ID List ENST00000554639.5,ENST00000398518.6,ENST00000429159.6,ENST00000648609.1,ENST00000649086.1,ENST00000648802.1,ENST00000649036.1,ENST00000523671.7,ENST00000520714.5,ENST00000650549.1,ENST00000648820.1,ENST00000423456.6,ENST00000521404.5,ENST00000424076.8,ENST00000649261.1,ENST00000452514.6,ENST00000556736.5,ENST00000522771.9,ENST00000650513.1,ENST00000647780.1,ENST00000648456.1,ENST00000650041.1,ENST00000452120.6,ENST00000648138.1,ENST00000412736.7,ENST00000519709.6,ENST00000650023.1,ENST00000451743.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000554639.5ENSG00000214548.17MEG3lincRNAintron-3
ENST00000398518.6ENSG00000214548.17MEG3lincRNAintron-3
ENST00000429159.6ENSG00000214548.17MEG3lincRNAintron-3
ENST00000648609.1ENSG00000214548.17MEG3lincRNAintron-3
ENST00000649086.1ENSG00000214548.17MEG3lincRNAintron-3
ENST00000648802.1ENSG00000214548.17MEG3lincRNAintron-3
ENST00000649036.1ENSG00000214548.17MEG3lincRNAintron-4
ENST00000523671.7ENSG00000214548.17MEG3lincRNAexon-1
ENST00000520714.5ENSG00000214548.17MEG3lincRNAintron-3
ENST00000650549.1ENSG00000214548.17MEG3lincRNAintron-3
ENST00000648820.1ENSG00000214548.17MEG3lincRNAintron-3
ENST00000423456.6ENSG00000214548.17MEG3lincRNAintron-3
ENST00000521404.5ENSG00000214548.17MEG3lincRNAintron-3
ENST00000424076.8ENSG00000214548.17MEG3lincRNAexon-3
ENST00000649261.1ENSG00000214548.17MEG3lincRNAintron-3
ENST00000452514.6ENSG00000214548.17MEG3lincRNAintron-1
ENST00000556736.5ENSG00000214548.17MEG3lincRNAintron-3
ENST00000522771.9ENSG00000214548.17MEG3lincRNAintron-3
ENST00000650513.1ENSG00000214548.17MEG3lincRNAintron-3
ENST00000647780.1ENSG00000214548.17MEG3lincRNAintron-3
ENST00000648456.1ENSG00000214548.17MEG3lincRNAexon-3
ENST00000650041.1ENSG00000214548.17MEG3lincRNAintron-3
ENST00000452120.6ENSG00000214548.17MEG3lincRNAexon-3
ENST00000648138.1ENSG00000214548.17MEG3lincRNAintron-3
ENST00000412736.7ENSG00000214548.17MEG3lincRNAintron-3
ENST00000519709.6ENSG00000214548.17MEG3lincRNAintron-3
ENST00000650023.1ENSG00000214548.17MEG3lincRNAintron-3
ENST00000451743.6ENSG00000214548.17MEG3lincRNAintron-3
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID NA

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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