Details of RNA Modification Site of hg38
mod ID m5C_site_14089 mod Site chr15:60355955-60355956:-
mod Type m5C Sequence GGACATTATTTCGGACACATCTGGTGACTTCCGCAAGCTGA
Motif Score noScore
RNA Structure Motif ......(((((((.....)))...))))...
 MFE -4.90
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE93749
Support sub-Dataset List GSE93749
Cell/Tissue List na
Seq Type List Bisulfite-seq
Transcript ID List ENST00000332680.8,ENST00000558998.5,ENST00000559113.5,ENST00000560367.6,ENST00000560014.5,ENST00000559176.5,ENST00000558985.5,ENST00000560389.5,ENST00000560466.5,ENST00000451270.6,ENST00000421017.6,ENST00000504475.6,ENST00000396024.7,ENST00000558132.5,ENST00000557906.5,ENST00000559559.5,ENST00000558503.5,ENST00000561022.5,ENST00000559818.5,ENST00000560165.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000332680.8ENSG00000182718.16ANXA2protein_codingcds-7
ENST00000558998.5ENSG00000182718.16ANXA2protein_codingcds-6
ENST00000559113.5ENSG00000182718.16ANXA2protein_codingcds-7
ENST00000560367.6ENSG00000182718.16ANXA2protein_codingcds-7
ENST00000560014.5ENSG00000182718.16ANXA2nonsense_mediated_decaycds-6
ENST00000559176.5ENSG00000182718.16ANXA2protein_codingcds-5
ENST00000558985.5ENSG00000182718.16ANXA2protein_codingcds-6
ENST00000560389.5ENSG00000182718.16ANXA2protein_codingcds-7
ENST00000560466.5ENSG00000182718.16ANXA2protein_codingcds-5
ENST00000451270.6ENSG00000182718.16ANXA2protein_codingcds-7
ENST00000421017.6ENSG00000182718.16ANXA2protein_codingcds-8
ENST00000504475.6ENSG00000182718.16ANXA2retained_intronexon-5
ENST00000396024.7ENSG00000182718.16ANXA2protein_codingcds-8
ENST00000558132.5ENSG00000182718.16ANXA2protein_codingcds-5
ENST00000557906.5ENSG00000182718.16ANXA2protein_codingcds-9
ENST00000559559.5ENSG00000182718.16ANXA2retained_intronexon-7
ENST00000558503.5ENSG00000182718.16ANXA2nonsense_mediated_decayutr3-9
ENST00000561022.5ENSG00000182718.16ANXA2nonsense_mediated_decayutr3-8
ENST00000559818.5ENSG00000182718.16ANXA2protein_codingcds-7
ENST00000560165.5ENSG00000182718.16ANXA2protein_codingcds-8
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 28418038

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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