Details of RNA Modification Site of hg38
mod ID m5C_site_14294 mod Site chr15:72206131-72206132:-
mod Type m5C Sequence GCTGTGCCATTGGGGTACAGCTGCTGCTCTTACTCTAGACC
Motif Score noScore
RNA Structure Motif ......((((((.(((....)))..))))))
 MFE -7.20
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE93749
Support sub-Dataset List GSE93749
Cell/Tissue List na
Seq Type List Bisulfite-seq
Transcript ID List ENST00000319622.10,ENST00000389093.7,ENST00000565184.5,ENST00000335181.10,ENST00000567118.5,ENST00000561609.5,ENST00000449901.6,ENST00000568459.5,ENST00000563986.1,ENST00000570166.1,ENST00000569857.5,ENST00000568883.5,ENST00000565154.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000319622.10ENSG00000067225.18PKMprotein_codingintron-8
ENST00000389093.7ENSG00000067225.18PKMprotein_codingintron-7
ENST00000565184.5ENSG00000067225.18PKMprotein_codingintron-8
ENST00000335181.10ENSG00000067225.18PKMprotein_codingintron-8
ENST00000567118.5ENSG00000067225.18PKMnonsense_mediated_decayintron-8
ENST00000561609.5ENSG00000067225.18PKMprotein_codingintron-8
ENST00000449901.6ENSG00000067225.18PKMprotein_codingintron-8
ENST00000568459.5ENSG00000067225.18PKMprotein_codingintron-8
ENST00000563986.1ENSG00000067225.18PKMretained_intronintron-1
ENST00000570166.1ENSG00000067225.18PKMretained_intronintron-1
ENST00000569857.5ENSG00000067225.18PKMnonsense_mediated_decayintron-8
ENST00000568883.5ENSG00000067225.18PKMprotein_codingintron-5
ENST00000565154.5ENSG00000067225.18PKMprotein_codingintron-9
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 28418038

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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