Details of RNA Modification Site of hg38
mod ID m5C_site_15813 mod Site chr16:30067615-30067616:+
mod Type m5C Sequence AAGGCGGATGATGGGCGTCCCTTCCCCCAAGTTATCAAATC
Motif Score noScore
RNA Structure Motif ((..((.(((...))).))..))........
 MFE -6.70
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE93749
Support sub-Dataset List GSE93749
Cell/Tissue List na
Seq Type List Bisulfite-seq
Transcript ID List ENST00000564521.6,ENST00000564546.6,ENST00000566897.6,ENST00000412304.6,ENST00000395248.6,ENST00000562168.5,ENST00000566846.5,ENST00000566012.1,ENST00000642816.2,ENST00000564595.7,ENST00000395240.7,ENST00000563060.6,ENST00000567555.1,ENST00000563987.5,ENST00000569798.5,ENST00000564688.1,ENST00000338110.10,ENST00000569545.5,ENST00000627059.2,ENST00000643777.2,ENST00000562679.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000564521.6ENSG00000149925.19ALDOAretained_intronexon-3
ENST00000564546.6ENSG00000149925.19ALDOAprotein_codingcds-3
ENST00000566897.6ENSG00000285043.1AC093512.2protein_codingutr3-6
ENST00000412304.6ENSG00000149925.19ALDOAprotein_codingcds-3
ENST00000395248.6ENSG00000285043.1AC093512.2protein_codingutr3-10
ENST00000562168.5ENSG00000149925.19ALDOAprotein_codingcds-4
ENST00000566846.5ENSG00000149925.19ALDOAprotein_codingcds-3
ENST00000566012.1ENSG00000149925.19ALDOAprocessed_transcriptexon-3
ENST00000642816.2ENSG00000149925.19ALDOAprotein_codingcds-4
ENST00000564595.7ENSG00000149925.19ALDOAprotein_codingcds-4
ENST00000395240.7ENSG00000149925.19ALDOAprotein_codingcds-3
ENST00000563060.6ENSG00000149925.19ALDOAprotein_codingcds-3
ENST00000567555.1ENSG00000149925.19ALDOAretained_intronexon-2
ENST00000563987.5ENSG00000149925.19ALDOAprotein_codingcds-4
ENST00000569798.5ENSG00000149925.19ALDOAprotein_codingcds-3
ENST00000564688.1ENSG00000149925.19ALDOAprotein_codingcds-1
ENST00000338110.10ENSG00000285043.1AC093512.2protein_codingutr3-8
ENST00000569545.5ENSG00000149925.19ALDOAprotein_codingcds-5
ENST00000627059.2ENSG00000285043.1AC093512.2protein_codingcds-8
ENST00000643777.2ENSG00000149925.19ALDOAprotein_codingcds-3
ENST00000562679.5ENSG00000149925.19ALDOAprotein_codingcds-4
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 28418038

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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