| mod ID | m5C_site_28693 | mod Site | chr20:33675917-33675918:- | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m5C | Sequence |
CCAGGGGGCCAGTTCAGGGCCCCAGCTGCCCCCCAGGATGG |
||||||||
| Motif Score | noScore | ||||||||||
| RNA Structure Motif |
(((((.......))))).............. |
MFE | -9.50 | ||||||||
| Support Dataset Num | 1 | Support sub-Dataset Num | 1 | ||||||||
| Support Dataset List | GSE133623 | ||||||||||
| Support sub-Dataset List | GSM3913397 | ||||||||||
| Cell/Tissue List | T24 | ||||||||||
| Seq Type List | Bisulfite-seq | ||||||||||
| Transcript ID List | ENST00000343380.6 | ||||||||||
| Transcript Detail |
|
||||||||||
| Conserved Sites | na | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID | NA |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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