Details of RNA Modification Site of hg38
mod ID m5C_site_30695 mod Site chr22:32801903-32801904:+
mod Type m5C Sequence GGTTGCCCCGCACGGCCCGGCGGGCGAGCGAGCTCGGGCTG
Motif Score noScore
RNA Structure Motif .(((((.((...)))))))((((....))))
MFE -12.20
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE90963
Support sub-Dataset List GSE90963
Cell/Tissue List na
Seq Type List Bisulfite-seq
Transcript ID List ENST00000266085.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000266085.6ENSG00000100234.11TIMP3protein_codingutr5-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 30872485

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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