Details of RNA Modification Site of hg38
mod ID m5C_site_33220 mod Site chr3:184320717-184320718:+
mod Type m5C Sequence TGCCTCCACACCCACCCCTCCCCAGGTACTGTCTGCTTTTC
Motif Score noScore
RNA Structure Motif ..(((...(((........)))..)))....
 MFE -1.40
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE93749
Support sub-Dataset List GSE93749
Cell/Tissue List na
Seq Type List Bisulfite-seq
Transcript ID List ENST00000350481.9,ENST00000484862.5,ENST00000428387.5,ENST00000413967.5,ENST00000424196.5,ENST00000342981.8,ENST00000435046.6,ENST00000346169.6,ENST00000493299.1,ENST00000450424.5,ENST00000382330.7,ENST00000441154.5,ENST00000421110.5,ENST00000411531.5,ENST00000457456.5,ENST00000444861.5,ENST00000442406.5,ENST00000392537.6,ENST00000456033.5,ENST00000444134.5,ENST00000427845.5,ENST00000426123.5,ENST00000414031.5,ENST00000434061.6,ENST00000427607.5,ENST00000352767.7
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000350481.9ENSG00000114867.20EIF4G1protein_codingcds-4
ENST00000484862.5ENSG00000114867.20EIF4G1retained_intronexon-2
ENST00000428387.5ENSG00000114867.20EIF4G1protein_codingcds-2
ENST00000413967.5ENSG00000114867.20EIF4G1nonsense_mediated_decayutr3-6
ENST00000424196.5ENSG00000114867.20EIF4G1protein_codingcds-7
ENST00000342981.8ENSG00000114867.20EIF4G1protein_codingcds-7
ENST00000435046.6ENSG00000114867.20EIF4G1protein_codingcds-1
ENST00000346169.6ENSG00000114867.20EIF4G1protein_codingcds-8
ENST00000493299.1ENSG00000114867.20EIF4G1retained_intronexon-1
ENST00000450424.5ENSG00000114867.20EIF4G1protein_codingcds-7
ENST00000382330.7ENSG00000114867.20EIF4G1protein_codingcds-9
ENST00000441154.5ENSG00000114867.20EIF4G1protein_codingcds-2
ENST00000421110.5ENSG00000114867.20EIF4G1protein_codingcds-8
ENST00000411531.5ENSG00000114867.20EIF4G1protein_codingcds-5
ENST00000457456.5ENSG00000114867.20EIF4G1protein_codingcds-2
ENST00000444861.5ENSG00000114867.20EIF4G1protein_codingcds-3
ENST00000442406.5ENSG00000114867.20EIF4G1nonsense_mediated_decaycds-4
ENST00000392537.6ENSG00000114867.20EIF4G1protein_codingcds-5
ENST00000456033.5ENSG00000114867.20EIF4G1protein_codingcds-6
ENST00000444134.5ENSG00000114867.20EIF4G1protein_codingcds-2
ENST00000427845.5ENSG00000114867.20EIF4G1protein_codingcds-5
ENST00000426123.5ENSG00000114867.20EIF4G1protein_codingcds-7
ENST00000414031.5ENSG00000114867.20EIF4G1protein_codingcds-8
ENST00000434061.6ENSG00000114867.20EIF4G1protein_codingcds-1
ENST00000427607.5ENSG00000114867.20EIF4G1protein_codingcds-2
ENST00000352767.7ENSG00000114867.20EIF4G1protein_codingcds-8
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 28418038

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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