Details of RNA Modification Site of hg38
mod ID m5C_site_35499 mod Site chr5:126555930-126555931:-
mod Type m5C Sequence GAGTTGGGAACCCATGGGACCGTGAGTATCTCCTTCTGCTT
Motif Score noScore
RNA Structure Motif ((((((.((((....)))).)).))))....
 MFE -6.60
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE93749
Support sub-Dataset List GSE93749
Cell/Tissue List na
Seq Type List Bisulfite-seq
Transcript ID List ENST00000637782.1,ENST00000636808.1,ENST00000637964.1,ENST00000637206.1,ENST00000636872.1,ENST00000636286.1,ENST00000503281.6,ENST00000553117.5,ENST00000635851.1,ENST00000636879.1,ENST00000458249.6,ENST00000636886.1,ENST00000638008.1,ENST00000637292.1,ENST00000636743.1,ENST00000497231.7,ENST00000636062.1,ENST00000637272.1,ENST00000636482.1,ENST00000636225.1,ENST00000409134.8
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000637782.1ENSG00000164904.18ALDH7A1protein_codingcds-12
ENST00000636808.1ENSG00000164904.18ALDH7A1nonsense_mediated_decayutr3-12
ENST00000637964.1ENSG00000164904.18ALDH7A1protein_codingcds-11
ENST00000637206.1ENSG00000164904.18ALDH7A1protein_codingintron-10
ENST00000636872.1ENSG00000164904.18ALDH7A1nonsense_mediated_decayutr3-13
ENST00000636286.1ENSG00000164904.18ALDH7A1processed_transcriptexon-10
ENST00000503281.6ENSG00000164904.18ALDH7A1nonsense_mediated_decayutr3-8
ENST00000553117.5ENSG00000164904.18ALDH7A1protein_codingintron-11
ENST00000635851.1ENSG00000164904.18ALDH7A1protein_codingcds-12
ENST00000636879.1ENSG00000164904.18ALDH7A1protein_codingcds-13
ENST00000458249.6ENSG00000164904.18ALDH7A1nonsense_mediated_decayutr3-13
ENST00000636886.1ENSG00000164904.18ALDH7A1protein_codingcds-9
ENST00000638008.1ENSG00000164904.18ALDH7A1nonsense_mediated_decayutr3-12
ENST00000637292.1ENSG00000164904.18ALDH7A1nonsense_mediated_decayutr3-8
ENST00000636743.1ENSG00000164904.18ALDH7A1protein_codingcds-10
ENST00000497231.7ENSG00000164904.18ALDH7A1retained_intronexon-3
ENST00000636062.1ENSG00000164904.18ALDH7A1retained_intronexon-12
ENST00000637272.1ENSG00000164904.18ALDH7A1protein_codingcds-12
ENST00000636482.1ENSG00000164904.18ALDH7A1retained_intronexon-3
ENST00000636225.1ENSG00000164904.18ALDH7A1nonsense_mediated_decayutr3-13
ENST00000409134.8ENSG00000164904.18ALDH7A1protein_codingcds-12
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 28418038

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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