Details of RNA Modification Site of hg38
mod ID m5C_site_36235 mod Site chr5:157036229-157036230:-
mod Type m5C Sequence TGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC
Motif Score noScore
RNA Structure Motif ..((((((((......))))).....)))..
 MFE -9.80
Support Dataset Num 1 Support sub-Dataset Num 2
Support Dataset List GSE133623
Support sub-Dataset List GSM3913396, GSM3913397
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000523175.5,ENST00000339252.7,ENST00000625904.2,ENST00000517644.1,ENST00000522693.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000523175.5ENSG00000113249.12HAVCR1protein_codingintron-7
ENST00000339252.7ENSG00000113249.12HAVCR1protein_codingintron-6
ENST00000625904.2ENSG00000113249.12HAVCR1protein_codingintron-6
ENST00000517644.1ENSG00000113249.12HAVCR1processed_transcriptintron-3
ENST00000522693.5ENSG00000113249.12HAVCR1protein_codingintron-7
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID NA

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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