Details of RNA Modification Site of hg38
mod ID m5C_site_3773 mod Site chr1:155670786-155670787:-
mod Type m5C Sequence AGCTACTCAGGAGGCTGAGGCAGGAGAATGGCCTGAACCCG
Motif Score noScore
RNA Structure Motif (((((....))))).((((.......)))).
 MFE -10.70
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE133623
Support sub-Dataset List GSM3913396
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000354691.9,ENST00000311573.9,ENST00000361831.9,ENST00000359205.9,ENST00000443231.5,ENST00000488784.5,ENST00000436865.5,ENST00000407221.5,ENST00000368339.9,ENST00000405763.7,ENST00000477470.1,ENST00000493625.5,rmsk_273686,ENST00000476093.5,ENST00000295566.8,ENST00000404643.5,ENST00000368340.9,ENST00000355499.8,ENST00000368330.6,ENST00000442834.6,ENST00000347088.9,ENST00000361140.8
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000354691.9ENSG00000163374.19YY1AP1nonsense_mediated_decayintron-7
ENST00000311573.9ENSG00000163374.19YY1AP1protein_codingintron-6
ENST00000361831.9ENSG00000163374.19YY1AP1protein_codingintron-8
ENST00000359205.9ENSG00000163374.19YY1AP1protein_codingintron-6
ENST00000443231.5ENSG00000163374.19YY1AP1protein_codingintron-8
ENST00000488784.5ENSG00000163374.19YY1AP1processed_transcriptintron-2
ENST00000436865.5ENSG00000163374.19YY1AP1nonsense_mediated_decayintron-7
ENST00000407221.5ENSG00000163374.19YY1AP1protein_codingintron-7
ENST00000368339.9ENSG00000163374.19YY1AP1protein_codingintron-6
ENST00000405763.7ENSG00000163374.19YY1AP1protein_codingintron-6
ENST00000477470.1ENSG00000163374.19YY1AP1processed_transcriptintron-2
ENST00000493625.5ENSG00000163374.19YY1AP1processed_transcriptintron-5
rmsk_273686rmsk_273686AluYAluexon
ENST00000476093.5ENSG00000163374.19YY1AP1processed_transcriptintron-5
ENST00000295566.8ENSG00000163374.19YY1AP1protein_codingintron-7
ENST00000404643.5ENSG00000163374.19YY1AP1protein_codingintron-7
ENST00000368340.9ENSG00000163374.19YY1AP1protein_codingintron-6
ENST00000355499.8ENSG00000163374.19YY1AP1protein_codingintron-7
ENST00000368330.6ENSG00000163374.19YY1AP1protein_codingintron-6
ENST00000442834.6ENSG00000163374.19YY1AP1retained_intronexon-1
ENST00000347088.9ENSG00000163374.19YY1AP1protein_codingintron-6
ENST00000361140.8ENSG00000163374.19YY1AP1nonsense_mediated_decayintron-7
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID NA

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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