Details of RNA Modification Site of hg38
mod ID m5C_site_5222 mod Site chr10:35211856-35211857:+
mod Type m5C Sequence TAGTTGCTTTTGAAGGAATACAATATATAGCTGGCAAGAAT
Motif Score noScore
RNA Structure Motif (((........................))).
 MFE -0.70
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE133623
Support sub-Dataset List GSM3913396
Cell/Tissue List T24
Seq Type List Bisulfite-seq
Transcript ID List ENST00000374721.7,ENST00000429130.7,ENST00000354759.7,ENST00000374728.7,ENST00000439705.5,ENST00000460270.5,ENST00000474362.5,ENST00000463314.5,ENST00000348787.6,ENST00000488328.5,ENST00000345491.7,ENST00000464475.1,ENST00000469517.1,ENST00000473940.5,ENST00000344351.5,ENST00000356917.9,ENST00000361599.8,ENST00000342105.7,ENST00000490511.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000374721.7ENSG00000095794.19CREMprotein_codingutr3-8
ENST00000429130.7ENSG00000095794.19CREMprotein_codingutr3-10
ENST00000354759.7ENSG00000095794.19CREMprotein_codingutr3-8
ENST00000374728.7ENSG00000095794.19CREMprotein_codingutr3-6
ENST00000439705.5ENSG00000095794.19CREMprotein_codingutr3-7
ENST00000460270.5ENSG00000095794.19CREMprotein_codingutr3-3
ENST00000474362.5ENSG00000095794.19CREMprotein_codingutr3-3
ENST00000463314.5ENSG00000095794.19CREMprotein_codingutr3-4
ENST00000348787.6ENSG00000095794.19CREMprotein_codingutr3-5
ENST00000488328.5ENSG00000095794.19CREMprotein_codingutr3-3
ENST00000345491.7ENSG00000095794.19CREMprotein_codingutr3-8
ENST00000464475.1ENSG00000095794.19CREMnonsense_mediated_decayutr3-3
ENST00000469517.1ENSG00000095794.19CREMprocessed_transcriptexon-3
ENST00000473940.5ENSG00000095794.19CREMprotein_codingutr3-4
ENST00000344351.5ENSG00000095794.19CREMprotein_codingutr3-3
ENST00000356917.9ENSG00000095794.19CREMprotein_codingutr3-3
ENST00000361599.8ENSG00000095794.19CREMprotein_codingutr3-6
ENST00000342105.7ENSG00000095794.19CREMprotein_codingutr3-6
ENST00000490511.1ENSG00000095794.19CREMprotein_codingutr3-3
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID NA

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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