| mod ID | m6A_site_102448 | mod Site | chr10:62813764-62813765:- | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GCCAGTGGAGGCAGCGAGGGACCCCGGCTGCCTGGTAGCAG |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||
| RNA Structure Motif |
...(((((((..((...))..)))))))... |
MFE | -15.40 | |||||||||||||||||||||||
| Support Dataset Num | 7 | Support sub-Dataset Num | 12 | |||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM3582053, GSM1594131, GSM1723347, GSM1723349, GSM1723351, GSM2283214, GSM2332975, GSM2417478, GSM2417479, GSM2460350, GSM2754216, GSM2754240 |
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| Cell/Tissue List |
A549, GM12878, LCLs, CD4T, GSC-11, HEK293A-TOA, iSLK |
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| Seq Type List | MeRIP-seq,m6A-seq | |||||||||||||||||||||||||
| Transcript ID List | ENST00000639815.1,ENST00000411732.3,ENST00000242480.4,ENST00000439032.4 | |||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_55806;panTro5:m6A_site_8703;susScr11:m6A_site_43006 | |||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1