Details of RNA Modification Site of hg38
mod ID m6A_site_103374 mod Site chr10:68747457-68747458:+
mod Type m6A Sequence AGACAACATTTGGTGTTCAGACTCAGCCCCAGCCCCAGTCA
Motif Score 3.31938095238095
RNA Structure Motif ....((((.(((.......))).))))....
 MFE -2.80
Support Dataset Num 2 Support sub-Dataset Num 8
Support Dataset List GSE102493, GSE83438
Support sub-Dataset List

GSM2991416, GSM2203043, GSM2203044, GSM2203047, GSM2203051, GSM2203055, GSM2203056, GSM2203059
Cell/Tissue List HeLa, Huh7
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000541012.5,ENST00000630771.2,ENST00000540210.5,rmsk_3334751,ENST00000543225.5,ENST00000543229.5,ENST00000536012.5,ENST00000265872.11,ENST00000543719.5,ENST00000539539.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000541012.5ENSG00000060339.14CCAR1nonsense_mediated_decaycds-8
ENST00000630771.2ENSG00000060339.14CCAR1protein_codingcds-8
ENST00000540210.5ENSG00000060339.14CCAR1nonsense_mediated_decaycds-8
rmsk_3334751rmsk_3334751(CAGCCA)nSimple_repeatexon
ENST00000543225.5ENSG00000060339.14CCAR1protein_codingcds-6
ENST00000543229.5ENSG00000060339.14CCAR1nonsense_mediated_decayutr3-6
ENST00000536012.5ENSG00000060339.14CCAR1protein_codingcds-6
ENST00000265872.11ENSG00000060339.14CCAR1protein_codingcds-8
ENST00000543719.5ENSG00000060339.14CCAR1protein_codingcds-7
ENST00000539539.5ENSG00000060339.14CCAR1protein_codingcds-7
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 1 Writer Name List RBM15B
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
RBM15BRBM15B:CH27097chr10:68747443-68747463SBDH685-27097
PubMed ID 29507755, 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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