| mod ID | m6A_site_109696 | mod Site | chr10:89338981-89338982:+ | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GTCTACTATCACTTGGGCAGACTCTCAGATGCTCAGATTTA |
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| Motif Score | 3.31938095238095 | |||||||||||||||
| RNA Structure Motif |
........((((((..........)))))). |
MFE | -6.40 | |||||||||||||
| Support Dataset Num | 16 | Support sub-Dataset Num | 40 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM2739522, GSM2739523, GSM3396437, GSM3396438, GSM3582046, GSM3582047, GSM3582048, GSM3582052, GSM3582053, GSM908335, GSM908337, GSM1166144, GSM1339405, GSM1339427, GSM1339439, GSM1594131, GSM1723347, GSM1723349, GSM1723351, GSM2010454, GSM2010456, GSM2203052, GSM2203060, GSM2332975, GSM2417477, GSM2417479, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460358, GSM2754211, GSM2754216, GSM2754237, GSM2754240, GSM2464931, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
HeLa, HEK293T, A549, HepG2, U2OS, fibroblasts, GM12878, LCLs, MM6, Huh7, GSC-11, HEK293A-TOA, iSLK, MSC, TIME, HEC-1-A, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||
| Transcript ID List | ENST00000371818.9,ENST00000371811.4 | |||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | panTro5:m6A_site_9393;rheMac8:m6A_site_57710;susScr11:m6A_site_44359 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1