RMBase v3.0: Decipher the Landscape, Mechanism and Function of RNA Modifications by Integrating Multi-dimensional High-throughput Sequencing Data.

Details of RNA Modification Site of hg38

mod ID

m6A_site_118674

mod Site

chr10:113165927-113165928:+

mod Type

m6A

Sequence

CCCACAGCTCCCTGGCCGGGACCCAGCCCCAGCCGCTGTCG

Motif Score

3.62240476190476

RNA Structure Motif

.......((((.(((.......))).)))).

MFE

-9.90

Support Dataset Num

Support sub-Dataset Num

Support Dataset List

GSE102493, GSE110320, GSE120229, GSE83438, GSE93676, GSE93911

Support sub-Dataset List

GSM2739506, GSM2991403, GSM2987449, GSM3396437, GSM3396438, GSM2203044, GSM2203047, GSM2203055, GSM2203059, GSM2754216, GSM2754244, GSM2464931

Cell/Tissue List

HeLa, HepG2, HEK293T, Huh7, iSLK, MSC, HEC-1-A

Seq Type List

m6A-seq,MeRIP-seq

Transcript ID List

ENST00000536810.5,ENST00000369397.8,ENST00000470254.1,ENST00000369386.5,ENST00000543371.5,ENST00000545257.6,ENST00000355995.8,ENST00000466338.5,ENST00000480888.1,ENST00000538897.5,ENST00000542695.5,ENST00000534894.5,ENST00000627217.3,ENST00000629706.2,ENST00000355717.9

Transcript Detail

Transcript ID	Gene ID	Gene Name	Gene Type	Region
ENST00000536810.5	ENSG00000148737.17	TCF7L2	protein_coding	cds-13
ENST00000369397.8	ENSG00000148737.17	TCF7L2	protein_coding	cds-14
ENST00000470254.1	ENSG00000148737.17	TCF7L2	nonsense_mediated_decay	utr3-7
ENST00000369386.5	ENSG00000148737.17	TCF7L2	protein_coding	utr3-7
ENST00000543371.5	ENSG00000148737.17	TCF7L2	protein_coding	cds-14
ENST00000545257.6	ENSG00000148737.17	TCF7L2	protein_coding	utr3-15
ENST00000355995.8	ENSG00000148737.17	TCF7L2	protein_coding	cds-15
ENST00000466338.5	ENSG00000148737.17	TCF7L2	protein_coding	utr3-4
ENST00000480888.1	ENSG00000148737.17	TCF7L2	protein_coding	cds-3
ENST00000538897.5	ENSG00000148737.17	TCF7L2	protein_coding	utr3-14
ENST00000542695.5	ENSG00000148737.17	TCF7L2	protein_coding	cds-15
ENST00000534894.5	ENSG00000148737.17	TCF7L2	protein_coding	utr3-11
ENST00000627217.3	ENSG00000148737.17	TCF7L2	protein_coding	cds-14
ENST00000629706.2	ENSG00000148737.17	TCF7L2	protein_coding	cds-13
ENST00000355717.9	ENSG00000148737.17	TCF7L2	protein_coding	utr3-13

Conserved Sites

snoRNA Num

snoRNA Guide Site

snoRNA Guide Detail

writer Num

Writer Name List

Writer Catalysis Detail

PubMed ID

29507755, 3086759, 27773535, 29109479, 30154548

Discription & Help

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.