Details of RNA Modification Site of hg38
mod ID m6A_site_121207 mod Site chr10:121503827-121503828:-
mod Type m6A Sequence GCAGGGGTCTCCGAGTATGAACTTCCAGAGGACCCAAAATG
Motif Score 3.37338095238095
RNA Structure Motif ((((((.((((....))))...)).))))..
 MFE -6.90
Support Dataset Num 2 Support sub-Dataset Num 4
Support Dataset List GSE102493, GSE93911
Support sub-Dataset List

GSM2739535, GSM2464911, GSM2464917, GSM2464919
Cell/Tissue List HeLa, endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000429361.5,ENST00000604236.5,ENST00000336553.10,ENST00000360144.7,ENST00000369060.8,ENST00000358487.9,ENST00000351936.10,ENST00000613048.4,ENST00000369056.5,ENST00000369061.8,ENST00000356226.8,ENST00000369059.5,ENST00000346997.6,ENST00000357555.9,ENST00000478859.5,ENST00000457416.6,ENST00000369058.7
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000429361.5ENSG00000066468.22FGFR2protein_codingcds-2
ENST00000604236.5ENSG00000066468.22FGFR2nonsense_mediated_decayutr3-9
ENST00000336553.10ENSG00000066468.22FGFR2protein_codingcds-9
ENST00000360144.7ENSG00000066468.22FGFR2protein_codingcds-9
ENST00000369060.8ENSG00000066468.22FGFR2protein_codingcds-8
ENST00000358487.9ENSG00000066468.22FGFR2protein_codingcds-10
ENST00000351936.10ENSG00000066468.22FGFR2protein_codingcds-10
ENST00000613048.4ENSG00000066468.22FGFR2protein_codingcds-9
ENST00000369056.5ENSG00000066468.22FGFR2protein_codingcds-9
ENST00000369061.8ENSG00000066468.22FGFR2protein_codingcds-7
ENST00000356226.8ENSG00000066468.22FGFR2protein_codingcds-8
ENST00000369059.5ENSG00000066468.22FGFR2protein_codingcds-8
ENST00000346997.6ENSG00000066468.22FGFR2protein_codingcds-9
ENST00000357555.9ENSG00000066468.22FGFR2protein_codingcds-9
ENST00000478859.5ENSG00000066468.22FGFR2protein_codingcds-9
ENST00000457416.6ENSG00000066468.22FGFR2protein_codingcds-10
ENST00000369058.7ENSG00000066468.22FGFR2protein_codingcds-10
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1