Details of RNA Modification Site of hg38
mod ID m6A_site_123719 mod Site chr10:129536289-129536290:+
mod Type m6A Sequence AATGAAACGCACCACACTGGACAGCCCTTTGGGGAAGCTGG
Motif Score 3.64304761904762
RNA Structure Motif ......(((...)))....(((....)))..
 MFE -4.80
Support Dataset Num 4 Support sub-Dataset Num 7
Support Dataset List
Support sub-Dataset List

GSM2739535, GSM2010454, GSM2754238, GSM2464905, GSM2464907, GSM2464915, GSM2464931
Cell/Tissue List

HeLa, MM6, iSLK, endometrial, HEC-1-A
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000306010.8,ENST00000482547.1,ENST00000482653.1,ENST00000651593.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000306010.8ENSG00000170430.10MGMTprotein_codingcds-2
ENST00000482547.1ENSG00000170430.10MGMTretained_intronexon-2
ENST00000482653.1ENSG00000170430.10MGMTprocessed_transcriptexon-2
ENST00000651593.1ENSG00000170430.10MGMTprotein_codingcds-2
Conserved Sites mm10:m6A_site_575506;susScr11:m6A_site_46719
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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