Details of RNA Modification Site of hg38
mod ID m6A_site_123928 mod Site chr10:131966669-131966670:-
mod Type m6A Sequence TAGCCCCAGCTACTTGGTAGACTGAGGCAGGAGGATCCCTT
Motif Score 3.31938095238095
RNA Structure Motif ((..((.(((((....)))))..))..))..
 MFE -5.60
Support Dataset Num 5 Support sub-Dataset Num 12
Support Dataset List
Support sub-Dataset List

GSM2739534, GSM2739535, GSM2991403, GSM1339405, GSM1594131, GSM2283210, GSM2460356, GSM2460358, GSM2754222, GSM2754224, GSM2754246, GSM2754248
Cell/Tissue List

HeLa, fibroblasts, GM12878, Jurkat, TIME
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List rmsk_3454003,ENST00000368636.8
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
rmsk_3454003rmsk_3454003AluJoAluexon
ENST00000368636.8ENSG00000176171.11BNIP3protein_codingutr3-6
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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