| mod ID | m6A_site_124879 | mod Site | chr11:205225-205226:- | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GGTGTTTTGGGCTCCAGAGGACTTACCTACAAAATACTCCT |
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| Motif Score | 4.06504166666667 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
..((((.(((...)))))))........... |
MFE | -2.50 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 15 | Support sub-Dataset Num | 50 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM3396437, GSM3396438, GSM3582049, GSM3582054, GSM928399, GSM908337, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM1166139, GSM1166140, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1594131, GSM1723347, GSM1723351, GSM1828594, GSM2010454, GSM2324292, GSM2324298, GSM2324308, GSM2324310, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2754211, GSM2754213, GSM2754220, GSM2754235, GSM2754237, GSM2754238 |
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| Cell/Tissue List |
HeLa, HEK293T, A549, HepG2, U2OS, GM12878, LCLs, CD8T, MM6, peripheral-blood, HEK293A-TOA, iSLK, MSC, TIME, TREX |
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| Seq Type List | m6A-seq,MeRIP-seq,m6A-CLIP/IP | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000332865.10,ENST00000382762.7,ENST00000486280.1,ENST00000325147.13,ENST00000410108.5,ENST00000529614.6 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_576340;panTro5:m6A_site_10886;rheMac8:m6A_site_16686;rn6:m6A_site_9476 | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1