| mod ID | m6A_site_125574 | mod Site | chr11:532356-532357:- | |||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CCCAGGGAGGCTGTGCACAGACTGTCTTGAACATCCCAAAT |
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| Motif Score | 3.31938095238095 | |||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
.(((((.((......)).)))))........ |
MFE | -5.60 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 9 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | GSE102493, GSE71154, GSE90914 | |||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739534, GSM2739535, GSM2991403, GSM1828594, GSM1828596, GSM2417477, GSM2417478, GSM2417479 |
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| Cell/Tissue List | HeLa, CD8T, A549, HEK293A-TOA | |||||||||||||||||||||||||||||||||||||||||||||
| Seq Type List | m6A-seq,m6A-CLIP/IP | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000451590.5,ENST00000397596.6,ENST00000478324.5,ENST00000493230.5,ENST00000462734.1,ENST00000397594.5,ENST00000417302.5,ENST00000311189.8 | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_576715;panTro5:m6A_site_10931;rheMac8:m6A_site_16730;susScr11:m6A_site_61804 | |||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID | 29507755, 26404942, 28525753 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1