Details of RNA Modification Site of hg38
mod ID m6A_site_127506 mod Site chr11:2659071-2659072:-
mod Type m6A Sequence GACCCTACGATGAAAAGCAGACTATGATGAGCGTGTTACAA
Motif Score 3.31938095238095
RNA Structure Motif ...........(((..((......))..)))
MFE -1.50
Support Dataset Num 1 Support sub-Dataset Num 2
Support Dataset List GSE83438
Support sub-Dataset List GSM2203063, GSM2203064
Cell/Tissue List Huh7
Seq Type List MeRIP-seq
Transcript ID List ENST00000597346.1,rmsk_3460682
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000597346.1ENSG00000269821.1KCNQ1OT1antisenseexon-1
rmsk_3460682rmsk_3460682L1MD3L1exon
Conserved Sites mm10:m6A_site_578552
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.


© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1