Details of RNA Modification Site of hg38
mod ID m6A_site_136883 mod Site chr11:34105679-34105680:+
mod Type m6A Sequence AGGCTTACTACGTGACCCGGACACCAGGCATACGCTAGGGG
Motif Score 3.64304761904762
RNA Structure Motif .....((((.((.((...)).))..))))..
 MFE -4.40
Support Dataset Num 7 Support sub-Dataset Num 22
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2739503, GSE129842, GSM908331, GSM1339429, GSM1339439, GSM2283211, GSM2417478, GSM2417479, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2754211, GSM2754213, GSM2754214, GSM2754222, GSM2754235, GSM2754238, GSM2754240, GSM2754248
Cell/Tissue List

HeLa, hESC-HEK293T, HepG2, A549, Jurkat, HEK293A-TOA, iSLK, MSC, TIME
Seq Type List m6A-seq,MAZTER-seq,MeRIP-seq
Transcript ID List ENST00000531159.6,ENST00000532503.5,ENST00000257829.8
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000531159.6ENSG00000135372.9NAT10protein_codingutr5-1
ENST00000532503.5ENSG00000135372.9NAT10processed_transcriptexon-1
ENST00000257829.8ENSG00000135372.9NAT10protein_codingutr5-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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