Details of RNA Modification Site of hg38
mod ID m6A_site_137239 mod Site chr11:35201131-35201132:+
mod Type m6A Sequence CAAAACAGAACCAGGACTGGACCCAGTGGAACCCAAGCCAT
Motif Score 3.62240476190476
RNA Structure Motif ..........((((....)))).........
 MFE -3.00
Support Dataset Num 4 Support sub-Dataset Num 8
Support Dataset List
Support sub-Dataset List

GSM2739522, GSM2739523, GSM3582052, GSM3582053, GSM2754224, GSM2464905, GSM2464913, GSM2464915
Cell/Tissue List HeLa, A549, TIME, endometrial
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000415148.6,ENST00000352818.8,ENST00000531873.5,ENST00000442151.6,ENST00000278385.10,ENST00000524922.1,ENST00000433892.6,ENST00000525241.1,ENST00000528455.5,ENST00000526000.6,ENST00000534296.5,ENST00000425428.6,ENST00000278386.10,ENST00000525348.1,ENST00000279452.10,ENST00000533222.5,ENST00000526553.6,ENST00000528086.5,ENST00000525685.6,ENST00000434472.6,ENST00000525211.6,ENST00000527889.6,ENST00000531110.6,ENST00000428726.7,ENST00000525688.5,ENST00000639002.1,ENST00000263398.10,ENST00000526669.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000415148.6ENSG00000026508.18CD44protein_codingcds-7
ENST00000352818.8ENSG00000026508.18CD44protein_codingintron-5
ENST00000531873.5ENSG00000026508.18CD44protein_codingintron-3
ENST00000442151.6ENSG00000026508.18CD44protein_codingintron-5
ENST00000278385.10ENSG00000026508.18CD44protein_codingintron-1
ENST00000524922.1ENSG00000026508.18CD44protein_codingcds-3
ENST00000433892.6ENSG00000026508.18CD44protein_codingintron-5
ENST00000525241.1ENSG00000026508.18CD44retained_intronintron-1
ENST00000528455.5ENSG00000026508.18CD44protein_codingcds-5
ENST00000526000.6ENSG00000026508.18CD44protein_codingintron-4
ENST00000534296.5ENSG00000026508.18CD44retained_intronexon-2
ENST00000425428.6ENSG00000026508.18CD44nonsense_mediated_decayintron-4
ENST00000278386.10ENSG00000026508.18CD44protein_codingintron-2
ENST00000525348.1ENSG00000026508.18CD44retained_intronexon-2
ENST00000279452.10ENSG00000026508.18CD44protein_codingintron-4
ENST00000533222.5ENSG00000026508.18CD44protein_codingintron-2
ENST00000526553.6ENSG00000026508.18CD44protein_codingcds-1
ENST00000528086.5ENSG00000026508.18CD44processed_transcriptintron-3
ENST00000525685.6ENSG00000026508.18CD44protein_codingintron-4
ENST00000434472.6ENSG00000026508.18CD44protein_codingintron-5
ENST00000525211.6ENSG00000026508.18CD44protein_codingintron-5
ENST00000527889.6ENSG00000026508.18CD44protein_codingintron-4
ENST00000531110.6ENSG00000026508.18CD44protein_codingintron-2
ENST00000428726.7ENSG00000026508.18CD44protein_codingcds-8
ENST00000525688.5ENSG00000026508.18CD44protein_codingintron-2
ENST00000639002.1ENSG00000026508.18CD44protein_codingintron-2
ENST00000263398.10ENSG00000026508.18CD44protein_codingintron-5
ENST00000526669.6ENSG00000026508.18CD44protein_codingintron-3
Conserved Sites mm10:m6A_site_346512
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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