Details of RNA Modification Site of hg38
mod ID m6A_site_139864 mod Site chr11:47258046-47258047:+
mod Type m6A Sequence CTGGCCACCGAGACTTCTGGACAGGAAACTGCACCATCCTC
Motif Score 3.64304761904762
RNA Structure Motif ............(((.(((....)))..)))
 MFE -3.80
Support Dataset Num 5 Support sub-Dataset Num 14
Support Dataset List
Support sub-Dataset List

GSM2739506, GSM2991403, GSM3083805, GSM3083806, GSM3083810, GSM2332975, GSM2332977, GSM2332978, GSM2460350, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913
Cell/Tissue List HeLa, GSC-11, iSLK, endometrial
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000486991.1,ENST00000529540.5,ENST00000461778.5,ENST00000467728.5,ENST00000407404.5,ENST00000444396.5,ENST00000531660.5,ENST00000532630.1,ENST00000476086.6,ENST00000457932.5,ENST00000481889.6,ENST00000412937.5,ENST00000487913.5,ENST00000525441.5,ENST00000436029.5,ENST00000395397.7,ENST00000616973.4,ENST00000481020.5,ENST00000405576.5,ENST00000437276.1,ENST00000495866.5,ENST00000419652.5,ENST00000436778.5,ENST00000420369.5,ENST00000405853.7,ENST00000449369.5,ENST00000527464.5,ENST00000441012.7
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000486991.1ENSG00000025434.19NR1H3retained_intronexon-2
ENST00000529540.5ENSG00000025434.19NR1H3processed_transcriptintron-2
ENST00000461778.5ENSG00000025434.19NR1H3processed_transcriptexon-1
ENST00000467728.5ENSG00000025434.19NR1H3protein_codingutr5-1
ENST00000407404.5ENSG00000025434.19NR1H3protein_codingintron-1
ENST00000444396.5ENSG00000025434.19NR1H3protein_codingutr5-2
ENST00000531660.5ENSG00000025434.19NR1H3protein_codingintron-1
ENST00000532630.1ENSG00000025434.19NR1H3processed_transcriptintron-1
ENST00000476086.6ENSG00000025434.19NR1H3processed_transcriptexon-1
ENST00000457932.5ENSG00000025434.19NR1H3protein_codingutr5-2
ENST00000481889.6ENSG00000025434.19NR1H3protein_codingintron-1
ENST00000412937.5ENSG00000025434.19NR1H3protein_codingintron-1
ENST00000487913.5ENSG00000025434.19NR1H3retained_intronintron-1
ENST00000525441.5ENSG00000025434.19NR1H3processed_transcriptexon-1
ENST00000436029.5ENSG00000025434.19NR1H3protein_codingutr5-1
ENST00000395397.7ENSG00000025434.19NR1H3protein_codingintron-1
ENST00000616973.4ENSG00000025434.19NR1H3protein_codingintron-2
ENST00000481020.5ENSG00000025434.19NR1H3retained_intronintron-1
ENST00000405576.5ENSG00000025434.19NR1H3protein_codingintron-1
ENST00000437276.1ENSG00000025434.19NR1H3protein_codingutr5-1
ENST00000495866.5ENSG00000025434.19NR1H3processed_transcriptintron-2
ENST00000419652.5ENSG00000025434.19NR1H3nonsense_mediated_decayutr5-2
ENST00000436778.5ENSG00000025434.19NR1H3protein_codingintron-2
ENST00000420369.5ENSG00000025434.19NR1H3nonsense_mediated_decayutr5-1
ENST00000405853.7ENSG00000025434.19NR1H3protein_codingutr5-1
ENST00000449369.5ENSG00000025434.19NR1H3protein_codingutr5-2
ENST00000527464.5ENSG00000025434.19NR1H3processed_transcriptintron-2
ENST00000441012.7ENSG00000025434.19NR1H3protein_codingutr5-1
Conserved Sites susScr11:m6A_site_65483
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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