Details of RNA Modification Site of hg38
mod ID m6A_site_139898 mod Site chr11:47268597-47268598:+
mod Type m6A Sequence TGAAACTGGTGAGCCTCCGGACCCTGAGCAGCGTCCACTCA
Motif Score 3.62240476190476
RNA Structure Motif ..((.......))((((.((....)).))))
 MFE -4.90
Support Dataset Num 8 Support sub-Dataset Num 20
Support Dataset List
Support sub-Dataset List

GSM2739506, GSM2739507, GSM2739523, GSM2739534, GSM2991403, GSM3396437, GSM928399, GSM1135032, GSM1135033, GSM1339425, GSM1339439, GSM2010454, GSM2203047, GSM2203051, GSM2203055, GSM2203056, GSM2203059, GSM2417477, GSM2417478, GSM2417479
Cell/Tissue List

HeLa, HEK293T, A549, MM6, Huh7, HEK293A-TOA
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000616973.4,ENST00000405853.7,ENST00000462051.5,ENST00000529540.5,ENST00000395397.7,ENST00000481889.6,ENST00000527949.1,ENST00000481020.5,ENST00000532630.1,ENST00000405576.5,ENST00000441012.7,ENST00000467728.5,ENST00000407404.5,ENST00000494018.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000616973.4ENSG00000025434.19NR1H3protein_codingcds-10
ENST00000405853.7ENSG00000025434.19NR1H3protein_codingcds-9
ENST00000462051.5ENSG00000025434.19NR1H3retained_intronexon-2
ENST00000529540.5ENSG00000025434.19NR1H3processed_transcriptexon-10
ENST00000395397.7ENSG00000025434.19NR1H3protein_codingcds-9
ENST00000481889.6ENSG00000025434.19NR1H3protein_codingcds-8
ENST00000527949.1ENSG00000025434.19NR1H3protein_codingcds-6
ENST00000481020.5ENSG00000025434.19NR1H3retained_intronexon-8
ENST00000532630.1ENSG00000025434.19NR1H3processed_transcriptexon-4
ENST00000405576.5ENSG00000025434.19NR1H3protein_codingcds-8
ENST00000441012.7ENSG00000025434.19NR1H3protein_codingcds-10
ENST00000467728.5ENSG00000025434.19NR1H3protein_codingcds-9
ENST00000407404.5ENSG00000025434.19NR1H3protein_codingcds-9
ENST00000494018.1ENSG00000025434.19NR1H3retained_intronexon-2
Conserved Sites rn6:m6A_site_65530
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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