Details of RNA Modification Site of hg38
mod ID m6A_site_141747 mod Site chr11:59142952-59142953:+
mod Type m6A Sequence GAGAATAGAAGCAGGCAAGGACCGCCGTGGGCACGGGGTCA
Motif Score 3.62240476190476
RNA Structure Motif ......(((((.......))).)).......
 MFE -4.00
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE85724, GSE93676
Support sub-Dataset List GSM2283214, GSM2460356
Cell/Tissue List CD4T, TIME
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000531676.1,ENST00000528737.5,ENST00000532790.5,ENST00000420244.5,ENST00000529985.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000531676.1ENSG00000166801.15FAM111Aretained_intronexon-1
ENST00000528737.5ENSG00000166801.15FAM111Aprotein_codingintron-1
ENST00000532790.5ENSG00000166801.15FAM111Aretained_intronexon-1
ENST00000420244.5ENSG00000166801.15FAM111Aprotein_codingutr5-1
ENST00000529985.1ENSG00000166801.15FAM111Aprocessed_transcriptexon-1
Conserved Sites rheMac8:m6A_site_17739
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 27371828, 29109479

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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