Details of RNA Modification Site of hg38
mod ID m6A_site_141791 mod Site chr11:59153369-59153370:+
mod Type m6A Sequence CTTATACTTACCAAAATGAGACTCGTAGTATCATTGAGTTT
Motif Score 3.31938095238095
RNA Structure Motif .........(((((.(((...))).))))).
 MFE -3.60
Support Dataset Num 3 Support sub-Dataset Num 3
Support Dataset List GSE37003, GSE55572, GSE65380
Support sub-Dataset List

GSM908337, GSM1339425, GSM1594131
Cell/Tissue List HepG2, A549, GM12878
Seq Type List m6A-seq
Transcript ID List ENST00000420244.5,ENST00000531147.1,ENST00000528737.5,ENST00000533703.1,ENST00000361723.7
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000420244.5ENSG00000166801.15FAM111Aprotein_codingcds-5
ENST00000531147.1ENSG00000166801.15FAM111Aprotein_codingcds-2
ENST00000528737.5ENSG00000166801.15FAM111Aprotein_codingcds-5
ENST00000533703.1ENSG00000166801.15FAM111Aprotein_codingcds-3
ENST00000361723.7ENSG00000166801.15FAM111Aprotein_codingcds-4
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 22575960, 24981863, 25611135

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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