| mod ID | m6A_site_143731 | mod Site | chr11:62516285-62516286:- | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGGTCTTCCTCTTTCCTGAGACTGGATCTGTTCAAACAGCA |
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| Motif Score | 3.31938095238095 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
.(((((((....))))..))).......... |
MFE | -3.80 | ||||||||||||||||||||||||||||
| Support Dataset Num | 4 | Support sub-Dataset Num | 7 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739503, GSM2739506, GSM2739507, GSM3396438, GSM908337, GSM2602071, GSM2602072 |
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| Cell/Tissue List | HeLa, HEK293T, HepG2, AML | ||||||||||||||||||||||||||||||
| Seq Type List | m6A-seq,MeRIP-seq,miCLIP | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000530124.5,ENST00000257247.11,ENST00000525875.1,ENST00000378024.9,ENST00000533365.5 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID | 29507755, 22575960, 28920958 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1