| mod ID | m6A_site_143974 | mod Site | chr11:62530171-62530172:- | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GCTGACGTTGATGTCTCAGGACCCAAAATGGATGCTGAAGT |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||
| RNA Structure Motif |
((((...(((....)))....))))...... |
MFE | -3.50 | |||||||||||||||||||||||
| Support Dataset Num | 4 | Support sub-Dataset Num | 10 | |||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2884195, GSM2884197, GSM2324298, GSM2464907, GSM2464911, GSM2464917, GSM2464919, GSM2464931 |
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| Cell/Tissue List |
HeLa, CD34, peripheral-blood, endometrial, HEC-1-A |
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| Seq Type List | m6A-seq | |||||||||||||||||||||||||
| Transcript ID List | ENST00000530124.5,ENST00000257247.11,ENST00000533365.5,ENST00000378024.9 | |||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_307388;rn6:m6A_site_10830;susScr11:m6A_site_64689 | |||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1