Details of RNA Modification Site of hg38
mod ID m6A_site_146933 mod Site chr11:64917028-64917029:-
mod Type m6A Sequence CCAAGAGCACCTCAGCCTGGACCAGCTCAGCCTCGATCTGT
Motif Score 3.62240476190476
RNA Structure Motif ......((((.((((......)))).)).))
 MFE -2.70
Support Dataset Num 6 Support sub-Dataset Num 27
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2987449, GSM3582046, GSM3582047, GSM3582052, GSM3582053, GSM3582054, GSM2283210, GSM2283211, GSM2283212, GSM2283213, GSM2283214, GSM2460358, GSM2754211, GSM2754213, GSM2754214, GSM2754216, GSM2754220, GSM2754222, GSM2754235, GSM2754237, GSM2754238, GSM2754240, GSM2754244, GSM2754246, GSM2754248, GSM2464931
Cell/Tissue List

HeLa, HepG2, A549, Jurkat, CD4T, TIME, iSLK, MSC, HEC-1-A
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000461701.5,ENST00000421419.3,ENST00000461955.1,ENST00000377264.8
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000461701.5ENSG00000110046.13ATG2Aretained_intronexon-1
ENST00000421419.3ENSG00000110046.13ATG2Aprotein_codingcds-1
ENST00000461955.1ENSG00000110046.13ATG2Aretained_intronexon-1
ENST00000377264.8ENSG00000110046.13ATG2Aprotein_codingcds-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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