| mod ID | m6A_site_147705 | mod Site | chr11:65423645-65423646:+ | |||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GGTGGCAGTGCTCCTTTTGGACTTTTCTCTAGGTTTGGCGC |
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| Motif Score | 4.06504166666667 | |||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
......(((....)))............... |
MFE | -2.40 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 14 | Support sub-Dataset Num | 35 | |||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2991403, GSM2884199, GSM2987447, GSM2987448, GSM3396437, GSM3396438, GSM908331, GSM908333, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM1166139, GSM1166140, GSM1166141, GSM1166142, GSM1166143, GSM1166144, GSM1339425, GSM1339427, GSM1339429, GSM2203052, GSM2324298, GSM2324306, GSM2332990, GSM2417478, GSM2417479, GSM2460348, GSM2460362, GSM2754226, GSM2464917, GSM2464919, GSM2464931 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, HEK293T, U2OS, A549, Huh7, peripheral-blood, HEK293A-TOA, iSLK, TREX, endometrial, HEC-1-A |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000612303.2,ENST00000642367.1,ENST00000501122.2,ENST00000499732.3,ENST00000601801.3,ENST00000646243.1,ENST00000645023.1,ENST00000620525.1 | |||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
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| Conserved Sites | mm10:m6A_site_304766 | |||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1