| mod ID | m6A_site_147723 | mod Site | chr11:65424856-65424857:+ | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CTTGGCATTCTAGTAAGAGGACCCTGAGGTGGGAGTTGTGG |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
..((((....))))..(((......)))... |
MFE | -4.50 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 13 | Support sub-Dataset Num | 27 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2991403, GSM2884197, GSM2884199, GSM3396437, GSM3396438, GSM3582047, GSM908331, GSM1135020, GSM1166139, GSM1166142, GSM1166143, GSM1339403, GSM1339427, GSM1594131, GSM1908206, GSM1908208, GSM1982257, GSM2203060, GSM2460345, GSM2460347, GSM2754211, GSM2754224, GSM2754226, GSM2754235, GSM2754237 |
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| Cell/Tissue List |
HeLa, CD34, HEK293T, HepG2, U2OS, fibroblasts, A549, GM12878, MT4, Huh7, iSLK, TIME, TREX |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000645023.1,ENST00000501122.2,ENST00000601801.3,ENST00000642367.1,ENST00000499732.3,ENST00000646243.1 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1