Details of RNA Modification Site of hg38
mod ID m6A_site_147730 mod Site chr11:65425250-65425251:+
mod Type m6A Sequence TTTGCTACAAGGTGGGGAAGACTGAAGAAGTGTTAACTGAA
Motif Score 3.31938095238095
RNA Structure Motif ............((.(((.....))).))..
 MFE -2.30
Support Dataset Num 5 Support sub-Dataset Num 7
Support Dataset List
Support sub-Dataset List

GSM3582047, GSM1339425, GSM1339429, GSM1908208, GSM2203060, GSM2464919, GSM2464931
Cell/Tissue List

HeLa, A549, MT4, Huh7, endometrial, HEC-1-A
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000645023.1,ENST00000499732.3,ENST00000601801.3,ENST00000646243.1,ENST00000501122.2
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000645023.1ENSG00000245532.8NEAT1lincRNAexon-2
ENST00000499732.3ENSG00000245532.8NEAT1lincRNAexon-2
ENST00000601801.3ENSG00000245532.8NEAT1lincRNAexon-2
ENST00000646243.1ENSG00000245532.8NEAT1lincRNAexon-3
ENST00000501122.2ENSG00000245532.8NEAT1lincRNAexon-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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