| mod ID | m6A_site_148031 | mod Site | chr11:65503757-65503758:+ | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CTGCGAACACTCTTTAATGGACCAGATCAGGATTTGAGCGG |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
................((......))..... |
MFE | -0.50 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 5 | |||||||||||||||||||||||||||||||||
| Support Dataset List | GSE102493, GSE107954, GSE93911 | |||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2991416, GSM2884195, GSM2884197, GSM2884199, GSM2464931 |
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| Cell/Tissue List | HeLa, CD34, HEC-1-A | |||||||||||||||||||||||||||||||||||
| Seq Type List | m6A-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000612781.1,ENST00000620465.4,ENST00000618925.1,ENST00000619449.2,ENST00000534336.1,ENST00000616527.4 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
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| Conserved Sites | mm10:m6A_site_304616 | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 4 | Writer Name List | METTL14,METTL3,RBM15B,WTAP | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail |
|
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| PubMed ID | 29507755, 30065315, 30154548 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1