| mod ID | m6A_site_148626 | mod Site | chr11:65653646-65653647:- | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TGAACAATCAAAGCACTTGGACTCTTGCTCTTTCTACTCTG |
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| Motif Score | 4.06504166666667 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
......((((..........))))....... |
MFE | -1.50 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 15 | Support sub-Dataset Num | 31 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739523, GSM2991403, GSM2884195, GSM2884197, GSM3396437, GSM3396438, GSM3582046, GSM3582047, GSM3582048, GSM3582049, GSM928399, GSM928401, GSM908337, GSM1135032, GSM1135033, GSM1339401, GSM1723349, GSM1723351, GSM1982263, GSM2010454, GSM2010456, GSM2283210, GSM2283211, GSM2417477, GSM2417478, GSM2417479, GSM2460354, GSM2460358, GSM2460360, GSM2602070 |
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| Cell/Tissue List |
HeLa, CD34, HEK293T, HepG2, LCLs, H1299, MM6, Jurkat, HEK293A-TOA, MSC, TIME, TREX, AML |
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| Seq Type List | m6A-seq,MeRIP-seq,miCLIP | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000406246.8,ENST00000526283.6,ENST00000308639.13,ENST00000615805.4,ENST00000525693.5,ENST00000612991.4 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_304065;panTro5:m6A_site_12695;rheMac8:m6A_site_17179 | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1