Details of RNA Modification Site of hg38
mod ID m6A_site_148695 mod Site chr11:65660566-65660567:-
mod Type m6A Sequence GAAGGCCTCCCTCAGCTAAGACTTGAATGGTGAGAAGGAGG
Motif Score 3.31938095238095
RNA Structure Motif .....((((.(............).))))..
 MFE -4.90
Support Dataset Num 2 Support sub-Dataset Num 7
Support Dataset List GSE107954, GSE83438
Support sub-Dataset List

GSM2884195, GSM2884197, GSM2884199, GSM2203047, GSM2203060, GSM2203063, GSM2203064
Cell/Tissue List CD34, Huh7
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000531238.1,ENST00000532879.5,ENST00000529389.5,ENST00000525658.5,ENST00000531484.5,ENST00000525693.5,ENST00000527074.5,ENST00000527874.1,ENST00000533546.5,ENST00000534558.5,ENST00000612991.4,ENST00000308639.13,ENST00000532999.5,ENST00000406246.8,ENST00000527749.5,ENST00000525301.5,ENST00000533187.5,ENST00000526738.1,ENST00000526283.6,ENST00000615805.4,ENST00000527909.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000531238.1ENSG00000173039.19RELAnonsense_mediated_decayintron-4
ENST00000532879.5ENSG00000173039.19RELAprotein_codingintron-4
ENST00000529389.5ENSG00000173039.19RELAnonsense_mediated_decayintron-4
ENST00000525658.5ENSG00000173039.19RELAnonsense_mediated_decayintron-3
ENST00000531484.5ENSG00000173039.19RELAretained_intronintron-3
ENST00000525693.5ENSG00000173039.19RELAprotein_codingintron-4
ENST00000527074.5ENSG00000173039.19RELAretained_intronintron-4
ENST00000527874.1ENSG00000173039.19RELAprotein_codingintron-3
ENST00000533546.5ENSG00000173039.19RELAnonsense_mediated_decayintron-3
ENST00000534558.5ENSG00000173039.19RELAprotein_codingintron-3
ENST00000612991.4ENSG00000173039.19RELAprotein_codingintron-4
ENST00000308639.13ENSG00000173039.19RELAprotein_codingintron-4
ENST00000532999.5ENSG00000173039.19RELAprotein_codingintron-4
ENST00000406246.8ENSG00000173039.19RELAprotein_codingintron-4
ENST00000527749.5ENSG00000173039.19RELAprotein_codingintron-4
ENST00000525301.5ENSG00000173039.19RELAretained_intronintron-4
ENST00000533187.5ENSG00000173039.19RELAprotein_codingintron-4
ENST00000526738.1ENSG00000173039.19RELAretained_intronexon-1
ENST00000526283.6ENSG00000173039.19RELAnonsense_mediated_decayintron-4
ENST00000615805.4ENSG00000173039.19RELAprotein_codingintron-4
ENST00000527909.5ENSG00000173039.19RELAnonsense_mediated_decayintron-3
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 30065315, 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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