Details of RNA Modification Site of hg38
mod ID m6A_site_152444 mod Site chr11:68775328-68775329:-
mod Type m6A Sequence CCCCACCAGGCTGCAGTGGGACATCCCGGGGGAAGTAAGTC
Motif Score 3.64304761904762
RNA Structure Motif ....(((....((((....)))).....)))
 MFE -6.00
Support Dataset Num 2 Support sub-Dataset Num 3
Support Dataset List GSE102493, GSE83438
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2203051
Cell/Tissue List HeLa, Huh7
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000540367.5,ENST00000539743.5,ENST00000376618.6,ENST00000265641.10
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000540367.5ENSG00000110090.13CPT1Aprotein_codingcds-12
ENST00000539743.5ENSG00000110090.13CPT1Aprotein_codingcds-12
ENST00000376618.6ENSG00000110090.13CPT1Aprotein_codingcds-13
ENST00000265641.10ENSG00000110090.13CPT1Aprotein_codingcds-13
Conserved Sites mm10:m6A_site_301324
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1