Details of RNA Modification Site of hg38
mod ID m6A_site_163191 mod Site chr11:111720591-111720592:+
mod Type m6A Sequence AGACAACCCTTCCCTTAAGGACATCATGTTAGCCAATCAGC
Motif Score 3.64304761904762
RNA Structure Motif ..((((.....))))................
 MFE -2.10
Support Dataset Num 3 Support sub-Dataset Num 9
Support Dataset List GSE102493, GSE46705, GSE83438
Support sub-Dataset List

GSM2739502, GSM2739503, GSM1135020, GSM1135032, GSM1135033, GSM2203043, GSM2203047, GSM2203051, GSM2203059
Cell/Tissue List HeLa, Huh7
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000304987.4,ENST00000533868.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000304987.4ENSG00000170145.5SIK2protein_codingcds-11
ENST00000533868.1ENSG00000170145.5SIK2processed_transcriptexon-3
Conserved Sites mm10:m6A_site_628246
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 24284625, 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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