| mod ID | m6A_site_164237 | mod Site | chr11:114296436-114296437:+ | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TGTTCTAAAAGAAGGGCTGAACTGATGGAAGGAATGCTGTT |
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| Motif Score | 3.37338095238095 | |||||||||||||||||||||||||
| RNA Structure Motif |
............................... |
MFE | 0.00 | |||||||||||||||||||||||
| Support Dataset Num | 11 | Support sub-Dataset Num | 42 | |||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739522, GSM2739534, GSM2739535, GSM3582046, GSM3582047, GSM3582048, GSM3582049, GSM908333, GSM908337, GSM1135032, GSM1135033, GSM1339405, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1982257, GSM2203056, GSM2203060, GSM2332975, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2754211, GSM2754213, GSM2754214, GSM2754224, GSM2754237, GSM2754238, GSM2754240, GSM2754248, GSM2464905, GSM2464911, GSM2464913, GSM2464915, GSM2464917, GSM2464919 |
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| Cell/Tissue List |
HeLa, HepG2, fibroblasts, A549, Huh7, GSC-11, iSLK, MSC, TIME, endometrial |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||
| Transcript ID List | ENST00000299964.3,ENST00000535401.5,ENST00000546313.1,ENST00000541090.1 | |||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1