| mod ID | m6A_site_170572 | mod Site | chr11:130405335-130405336:- | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TCAACTGTCCAGTGGACTGGACCTTGCTCGGGTTCAAGTAG |
|||||||||||||
| Motif Score | 3.62240476190476 | |||||||||||||||
| RNA Structure Motif |
.((((...))))(((((((.....))))))) |
MFE | -10.20 | |||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 9 | |||||||||||||
| Support Dataset List | GSE52600, GSE55572, GSE90914 | |||||||||||||||
| Support sub-Dataset List |
GSM1272358, GSM1272360, GSM1272366, GSM1272368, GSM1339395, GSM1339407, GSM2417477, GSM2417478, GSM2417479 |
|||||||||||||||
| Cell/Tissue List |
H1A, H1B, hESCs, fibroblasts, HEK293A-TOA |
|||||||||||||||
| Seq Type List | m6A-seq | |||||||||||||||
| Transcript ID List | ENST00000531752.1,ENST00000257359.7 | |||||||||||||||
| Transcript Detail |
|
|||||||||||||||
| Conserved Sites | mm10:m6A_site_621450;rn6:m6A_site_96313 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID | 25456834, 24981863, 28525753 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1