| mod ID | m6A_site_172847 | mod Site | chr12:2859557-2859558:- | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CTCCTTTGCTTCCAGTTCAGACTATCAAGGAGGAAGAAATC |
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| Motif Score | 3.31938095238095 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
...(((((...............)))))... |
MFE | -4.30 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 14 | Support sub-Dataset Num | 31 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739503, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2987447, GSM2987449, GSM908329, GSM908331, GSM908337, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM1339429, GSM1339439, GSM1982257, GSM1982263, GSM2010454, GSM2010456, GSM2283210, GSM2283211, GSM2283213, GSM2324292, GSM2324298, GSM2324308, GSM2324310, GSM2332975, GSM2460348, GSM2464927, GSM2564019 |
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| Cell/Tissue List |
HeLa, HepG2, A549, H1299, MM6, Jurkat, peripheral-blood, GSC-11, iSLK, HEC-1-A, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000359843.7,ENST00000535350.1,ENST00000536066.1,ENST00000361953.7,ENST00000342628.6,ENST00000627656.2 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 1 | Writer Name List | RBM15B | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail |
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| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1